Unable to install onenote on mac code#

I previously provided a solution to do this and I'll show a better way here (just use a package manager for the Perl module). This is an important point because you may run into issues using SAM/BAM files generated with samtools or other aligners because most tools use htslib these days.ДЇor building the module, you are on the right track with the version you are using but it is difficult to build if you do not know the correct flags. The module Bio::DB::Sam provides bindings to an older version of samtools that did not rely htslib. This build did not produce a '.so' file, even though there is a rule in the samtools-0.1.18 Makefile that looks like it (maybe?) ought to produce one. Users/gvwilson/debarcer-packages/bin/samtools Note that I have installed samtools 0.1.18 (to match the version on our cluster) by:Д¬opying 'samtools', 'bcftools/bcftools', and 'misc/*.pl' to ~/debarcer-packages/bin, which is on my path

I get the same results when cloning bioperl-live from GitHub (sync'd to revision 73c446c69a77) and trying to install that way. ) at -e line 1.Д«EGIN failed-compilation aborted at -e line 1. okДЄfterwards, I test with: perl -e 'use Bio::DB::Sam 'ДЄnd get: Can't locate Bio/DB/Sam.pm in (you may need to install the Bio::DB::Sam module) contains: /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.2/darwin-thread-multi-2level /Library/Perl/Updates/5.18.2 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed skipped: The optional module GD (or dependencies thereof) was not installed 'Do you want to run tests that require connection to servers across the internet' => 'n'Д®ventually get (with some lines deleted): Running Build test 'Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests?' => 'n' 'brew install expat' tells me that expat-2.1.0_1 is already installed Upgraded CPAN as per INSTALL instructions

Unable to install onenote on mac code#

I'm trying to get biotools working on my Mac so that I can run some Perl5 code that uses Bio::DB::Sam, but am stymied.